PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.374330.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 472aa    MW: 51186.1 Da    PI: 5.5393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.374330.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09350398355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Cucsa.374330.4 350 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 398
                     58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15345405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-11345402No hitNo description
PROSITE profilePS5088815.523347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-15348403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSVVSNGD LGVSSCPSTS  60
MSNLFTPALL NHHTESQNSG FCTTFNEQNS IVTSNTTLVD GEDLNSLRSN GDTRTLGMDW  120
NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS  180
LGIHSGGGFR RQEVISRNGV SKDVSLPMEL EAEEKSPPKN EKDSEMSQDR AKQGCVGESG  240
NDSDEAGFSG GQDEQCTMGG TMTEPSTEGL CFKKRKRGEQ NVGLGQVKEA PQQINETAKN  300
GAFNQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VELIPGSILT SKSSSQKNSF  420
NPRLVHPCLV FLLICPCLTS LNIRLTMDLF RLVFLQWGAL RTCYEEQLIP S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149484.20.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A0A0KLP90.0A0A0A0KLP9_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s14600.11e-120(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-62bHLH family protein